sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3IRW-R44-R75
X
>3CCJ-02740-02691
X
>3CME-02740-02691
X
>1VQ5-02740-02691
X
>1Q81-A2740-A2691
X
>1M90-A2740-A2691
X
>1VQ8-02740-02691
X
>1VQ9-02740-02691
X
>1VQ6-02740-02691
X
>1VQM-02740-02691
X
>1VQP-02740-02691
X
</seq>
<hsp>
0 1:1.0
0 2:0.768142033411
0 3:0.743313093325
0 4:0.770431760874
0 5:0.707702602024
0 6:0.590619868671
0 7:0.613899223426
0 8:0.719750809716
0 9:0.657385452432
0 10:0.633457411774
1 2:0.522399651426
1 3:0.547397211097
1 4:0.551006431489
1 5:0.569592549806
1 6:0.584086982491
1 7:0.601529665088
1 8:0.504326999849
1 9:0.59717127732
1 10:0.582265438766
2 3:0.249209732045
2 4:0.307933128201
2 5:0.347086344086
2 6:0.331786763134
2 7:0.279519995756
2 8:0.23561743239
2 9:0.207679019403
2 10:0.207679268757
3 4:0.116753110655
3 5:0.142555887705
3 6:0.238166370874
3 7:0.215967054413
3 8:0.114823169385
3 9:0.188784265462
3 10:0.205183663683
4 5:0.0895782589631
4 6:0.211751334998
4 7:0.205311721584
4 8:0.105707242936
4 9:0.200085630014
4 10:0.219554213262
5 6:0.167938409994
5 7:0.179559368417
5 8:0.123294876175
5 9:0.20668391772
5 10:0.220889757654
6 7:0.0950752827305
6 8:0.164850274282
6 9:0.157058918673
6 10:0.143189563823
7 8:0.149433367042
7 9:0.0872299171873
7 10:0.088036105028
8 9:0.13819186316
8 10:0.148711323154
9 10:0.0447933240041
</hsp>