sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QA4-02392-02417
X
>3CCJ-02393-02418
X
>3CCQ-02393-02418
X
>1YJ9-02393-02418
X
>1K9M-A2393-A2418
X
>3CC7-02393-02418
X
>1KD1-A2393-A2418
X
>3CXC-02393-02418
X
>1YJN-02393-02418
X
>2ZUE-B33-B38
X
</seq>
<hsp>
0 1:0.267557242729
0 2:0.410703109975
0 3:0.297529349976
0 4:0.345314602322
0 5:0.381387760732
0 6:0.314527096089
0 7:0.34420545058
0 8:0.384792354538
0 9:0.871195785004
1 2:0.4351680886
1 3:0.300234898068
1 4:0.358257535486
1 5:0.383155590039
1 6:0.332116737312
1 7:0.264848581449
1 8:0.309300931918
1 9:0.856111743997
2 3:0.148591707837
2 4:0.14505352009
2 5:0.124862685081
2 6:0.196483815848
2 7:0.261355005925
2 8:0.235298921557
2 9:1.0
3 4:0.0994249897822
3 5:0.136806213881
3 6:0.140967641069
3 7:0.185940998118
3 8:0.196311425058
3 9:0.951455407551
4 5:0.120969850817
4 6:0.107979066795
4 7:0.185859504053
4 8:0.211009290559
4 9:0.930992896289
5 6:0.119628452809
5 7:0.1999044236
5 8:0.151070096787
5 9:0.917136307998
6 7:0.166345968729
6 8:0.170646577793
6 9:0.852185775055
7 8:0.133149588491
7 9:0.84356204479
8 9:0.860268195644
</hsp>