sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A783-A2064
X
>3R8S-A1606-A1610
X
>3OI1-A1553-A1557
X
>3OHZ-A1553-A1557
X
>3F1H-A1631-A1635
X
>3F1F-A1631-A1635
X
</seq>
<hsp>
0 1:0.960507079703
0 2:0.999998865119
0 3:0.99298075485
0 4:0.978477017211
0 5:0.97865468559
1 2:0.0556676759613
1 3:0.0506834897241
1 4:0.0586538523979
1 5:0.0563682470198
2 3:0.0141264046853
2 4:0.0707326667271
2 5:0.0691044981712
3 4:0.068975904008
3 5:0.0673736163682
4 5:0.00475713898084
</hsp>