sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCS-02348-02352
X
>3KNK-A2377-A2381
X
>3CCL-02348-02352
X
>3CME-02348-02352
X
>3CC7-02348-02352
X
>3CCU-02348-02352
X
>3I56-02348-02352
X
>3CCQ-02348-02352
X
>2QA4-02347-02351
X
</seq>
<hsp>
0 1:0.911936806152
0 2:0.163681964727
0 3:0.201172520166
0 4:0.188714958088
0 5:0.186581887163
0 6:0.17727667266
0 7:0.160138322952
0 8:0.156860455623
1 2:0.907879880072
1 3:1.0
1 4:0.90728348051
1 5:0.872376254679
1 6:0.839133823817
1 7:0.927962416818
1 8:0.968521229299
2 3:0.141024085691
2 4:0.0314201099342
2 5:0.0581032423755
2 6:0.228424432864
2 7:0.0559469598515
2 8:0.202623338639
3 4:0.145893750619
3 5:0.194244460269
3 6:0.285096359459
3 7:0.127396995485
3 8:0.178449940791
4 5:0.0533018125303
4 6:0.239457360732
4 7:0.0648746972143
4 8:0.215561918739
5 6:0.224227832075
5 7:0.0924072504144
5 8:0.232686457473
6 7:0.202372826079
6 8:0.166018320239
7 8:0.158308332213
</hsp>