sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OI1-A2320-A2288
X
>3OHZ-A2320-A2288
X
>3R8S-A1943-A1947
X
>3R8S-A2483-A2451
X
>3OH7-A2320-A2288
X
>3OH5-A2320-A2288
X
>3OHK-A2320-A2288
X
>3OHJ-A2320-A2288
X
>3FTM-C4-D6
X
>3FTM-A4-B6
X
</seq>
<hsp>
0 1:0.0244411668611
0 2:0.826313161841
0 3:0.148944070694
0 4:0.0498856271383
0 5:0.0549368345154
0 6:0.0557642987223
0 7:0.0603092000799
0 8:0.674107243992
0 9:0.711597887548
1 2:0.836548014628
1 3:0.147025336775
1 4:0.0417875754539
1 5:0.0435514219162
1 6:0.051744963031
1 7:0.0509031292619
1 8:0.670040625606
1 9:0.706554950214
2 3:0.722367671193
2 4:0.856240216277
2 5:0.864471817913
2 6:0.820820382393
2 7:0.826980514592
2 8:0.999998835246
2 9:0.993429094738
3 4:0.173985667231
3 5:0.178904752109
3 6:0.135534828763
3 7:0.133957464661
3 8:0.715410006418
3 9:0.740275825609
4 5:0.0127787108914
4 6:0.0509739205038
4 7:0.0530051373686
4 8:0.658120161512
4 9:0.695572991683
5 6:0.0590885839382
5 7:0.0588510040026
5 8:0.657776880432
5 9:0.695341752905
6 7:0.0155241877596
6 8:0.668730979265
6 9:0.702744925281
7 8:0.67073627741
7 9:0.704164953798
8 9:0.0798378312479
</hsp>