sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3G9C-Q134-Q69
X
>2NZ4-S134-S69
X
>3L3C-S134-S69
X
>3G9C-R134-R69
X
>3U5D-13061-13058
X
>2NZ4-P134-P69
X
>3U5H-53062-53059
X
>2CT8-C17-C55
X
</seq>
<hsp>
0 1:0.0922524807702
0 2:0.24085145438
0 3:0.123297584048
0 4:0.999310346431
0 5:0.132843399533
0 6:0.748442937682
0 7:0.432116847994
1 2:0.188364255034
1 3:0.0971557260615
1 4:0.973853312649
1 5:0.083123592194
1 6:0.722839872367
1 7:0.467490777186
2 3:0.153410907243
2 4:0.970190457234
2 5:0.143458719248
2 6:0.749967906142
2 7:0.561452170118
3 4:0.99999948288
3 5:0.105051367113
3 6:0.760932317948
3 7:0.479513935234
4 5:0.963670952068
4 6:0.815926825856
4 7:0.999455916957
5 6:0.694833876467
5 7:0.481620337443
6 7:0.733105542211
</hsp>