sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-0477-0476
X
>3OH7-A1630-A1629
X
>3R8T-A1682-A1681
X
>3R8S-A1462-A1461
X
>1Q82-A1700-A1699
X
>1KD1-A1700-A1699
X
>3CXC-01700-01699
X
>3CC2-01700-01699
X
>1Q81-A1700-A1699
X
>1YJ9-01700-01699
X
>1FFK-01653-01652
X
>1M90-A1700-A1699
X
</seq>
<hsp>
0 1:0.65256955308
0 2:0.578509437166
0 3:0.457405041043
0 4:0.969312637089
0 5:0.975583007687
0 6:0.929953609699
0 7:0.979516723582
0 8:0.999998750972
0 9:0.983423225316
0 10:0.990720547502
0 11:0.973848283303
1 2:0.161004691108
1 3:0.243091253453
1 4:0.409391732274
1 5:0.447432829096
1 6:0.379964292009
1 7:0.44148973091
1 8:0.46574669352
1 9:0.444080102724
1 10:0.444308316851
1 11:0.443740664938
2 3:0.175979810621
2 4:0.527507823604
2 5:0.553691131257
2 6:0.491133797283
2 7:0.550913293164
2 8:0.5714995898
2 9:0.550170118607
2 10:0.558641336281
2 11:0.559478901316
3 4:0.562077085679
3 5:0.573522399341
3 6:0.520261401493
3 7:0.573733130848
3 8:0.594863422225
3 9:0.575124874084
3 10:0.585223838319
3 11:0.576706781428
4 5:0.0872221920094
4 6:0.0713166106311
4 7:0.0750329586444
4 8:0.0978830434311
4 9:0.0840383593274
4 10:0.0655802632658
4 11:0.068810681962
5 6:0.0765232959379
5 7:0.0593409411366
5 8:0.0594553470109
5 9:0.0602793109117
5 10:0.0615626024134
5 11:0.06704924745
6 7:0.0834543201509
6 8:0.10894732285
6 9:0.0837017623208
6 10:0.083050516572
6 11:0.0898303053149
7 8:0.0417092355421
7 9:0.0256163213061
7 10:0.0299954164486
7 11:0.0548576234868
8 9:0.0468857869672
8 10:0.0512375450212
8 11:0.0773164533005
9 10:0.0409120755848
9 11:0.0732887136888
10 11:0.0568605827916
</hsp>