sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1NJI-A1725-A1724
X
>3CD6-01725-01724
X
>3CC2-01725-01724
X
>1JJ2-01725-01724
X
>1S72-01725-01724
X
>3OHZ-A1630-A1629
X
>2J01-A1630-A1629
X
>3OI1-A1630-A1629
X
>2YJY-C7-C6
X
>3KNK-A1629-A1628
X
</seq>
<hsp>
0 1:0.184280613588
0 2:0.052529341572
0 3:0.0493793408863
0 4:0.0475752403036
0 5:0.232144987118
0 6:0.23400405791
0 7:0.228995379013
0 8:0.944005131641
0 9:0.371889003207
1 2:0.156803410773
1 3:0.190375594576
1 4:0.179314573755
1 5:0.241913362659
1 6:0.271655492221
1 7:0.232122898777
1 8:0.999998039453
1 9:0.504454295849
2 3:0.0568649742761
2 4:0.042951217379
2 5:0.204650318435
2 6:0.211382161374
2 7:0.19925462719
2 8:0.976136911929
2 9:0.374862782946
3 4:0.0167339819213
3 5:0.232855181938
3 6:0.232801235119
3 7:0.2282439795
3 8:0.969294857749
3 9:0.371305435052
4 5:0.218724885988
4 6:0.221022077379
4 7:0.213747968511
4 8:0.970616573118
4 9:0.370644184608
5 6:0.077758201356
5 7:0.0277568655415
5 8:0.963995968442
5 9:0.366719062605
6 7:0.0905400752612
6 8:0.945086719168
6 9:0.320260865333
7 8:0.968631692182
7 9:0.367296367031
8 9:0.918305142433
</hsp>