sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-1494-1493
X
>3R8T-A720-A719
X
>2BX2-R8-R7
X
>3F1F-A1336-A1335
X
>3F1H-A1336-A1335
X
>3KNH-A1316-A1315
X
>3R8T-A1583-A1582
X
>3KNI-A1272-A1271
X
>3OGY-A350-A349
X
</seq>
<hsp>
0 1:0.635884361136
0 2:0.601074163647
0 3:0.256472929657
0 4:0.264118484352
0 5:0.688940480347
0 6:0.475416303781
0 7:0.376760476827
0 8:0.387468581405
1 2:0.434487305119
1 3:0.796061428845
1 4:0.805639722261
1 5:0.999999394622
1 6:0.552338878815
1 7:0.741955484621
1 8:0.775115408039
2 3:0.701023564812
2 4:0.711879479337
2 5:0.856879718978
2 6:0.638673276747
2 7:0.78455055964
2 8:0.71809257335
3 4:0.0200780312139
3 5:0.496590035313
3 6:0.518130781016
3 7:0.377928827597
3 8:0.262295459309
4 5:0.49594025395
4 6:0.528621799269
4 7:0.381848568534
4 8:0.26477058015
5 6:0.643111132515
5 7:0.583020596459
5 8:0.346509668867
6 7:0.316973380988
6 8:0.397403636239
7 8:0.269050124431
</hsp>