sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OGY-A123-A122
X
>3OGE-A123-A122
X
>1XMQ-A123-A122
X
>2VQE-A123-A122
X
>2UUA-A123-A122
X
>3F1E-A123-A122
X
>3LOA-B15-B14
X
>1N32-A123-A122
X
>3KNH-A114-A113
X
</seq>
<hsp>
0 1:0.0523613436265
0 2:0.589297086819
0 3:0.825309380662
0 4:0.670101650771
0 5:0.40231108486
0 6:0.790278682202
0 7:0.870679806271
0 8:1.0
1 2:0.586621782356
1 3:0.825315323243
1 4:0.658261961816
1 5:0.406777456858
1 6:0.797359957679
1 7:0.86831123507
1 8:0.994904273653
2 3:0.268837601298
2 4:0.221962848899
2 5:0.440001558395
2 6:0.620230035152
2 7:0.330075158867
2 8:0.731650926227
3 4:0.34323760592
3 5:0.588720807613
3 6:0.673307488402
3 7:0.106467941594
3 8:0.716841636563
4 5:0.475179279389
4 6:0.796955617846
4 7:0.383838552752
4 8:0.843280667728
5 6:0.803345231077
5 7:0.619373939113
5 8:0.924608089685
6 7:0.6978548395
6 8:0.371661060361
7 8:0.708619803704
</hsp>