sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3L3C-S105-S104
X
>1Q82-A977-A976
X
>3CMA-0977-0976
X
>3G78-A70-A69
X
>3OH7-A1383-A1382
X
>3F1G-A160-A159
X
>3F1E-A160-A159
X
</seq>
<hsp>
0 1:0.567352747636
0 2:0.512856534293
0 3:1.0
0 4:0.853396347627
0 5:0.77519472551
0 6:0.774341846073
1 2:0.0724084258526
1 3:0.492122318714
1 4:0.345814796951
1 5:0.297068344328
1 6:0.296365062274
2 3:0.555629273975
2 4:0.411267894237
2 5:0.335880961411
2 6:0.335035554597
3 4:0.186553296016
3 5:0.321354927266
3 6:0.323225790736
4 5:0.249423676834
4 6:0.25116396889
5 6:0.00452860982745
</hsp>