sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1234-A1233
X
>2ZJR-X2237-X2236
X
>1M5V-E61-E60
X
>1M5O-E61-E60
X
>1M5K-E61-E60
X
>1M5K-B61-B60
X
>3I2U-C12-C11
X
</seq>
<hsp>
0 1:0.634020035741
0 2:0.922440419612
0 3:0.801428621422
0 4:0.873129819398
0 5:0.979177263638
0 6:1.0
1 2:0.576081332103
1 3:0.554447881639
1 4:0.608677315424
1 5:0.542062312581
1 6:0.689074978373
2 3:0.159433021882
2 4:0.207666389886
2 5:0.159313626992
2 6:0.3353249303
3 4:0.216239973735
3 5:0.286228062103
3 6:0.356088418097
4 5:0.25776568067
4 6:0.429533084237
5 6:0.389952280145
</hsp>