sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A1400-A1399
X
>3OXE-A65-A64
X
>3OXM-B65-B64
X
>3OXM-A65-A64
X
>1XMQ-A335-A334
X
>3OXE-B65-B64
X
>3OWW-A65-A64
X
>3F1H-A1465-A1464
X
>3F1H-A1914-A1913
X
>3F1F-A1914-A1913
X
>3OH5-A1395-A1394
X
>3OH7-A1395-A1394
X
</seq>
<hsp>
0 1:0.267198563854
0 2:0.287352871195
0 3:0.285300228983
0 4:0.445501964321
0 5:0.273432478841
0 6:0.270959646617
0 7:0.17641711815
0 8:0.641751832609
0 9:0.64213522527
0 10:0.152334562927
0 11:0.151450869642
1 2:0.029090723526
1 3:0.0325267322902
1 4:0.216696073128
1 5:0.033490197249
1 6:0.0198423231791
1 7:0.116723622127
1 8:0.837085574805
1 9:0.836920561486
1 10:0.165709123227
1 11:0.164742346134
2 3:0.0115885436414
2 4:0.195681964494
2 5:0.0317002825439
2 6:0.022004644865
2 7:0.134726449908
2 8:0.861553157477
2 9:0.861421611436
2 10:0.180497510226
2 11:0.179851383753
3 4:0.195733391992
3 5:0.0348958985142
3 6:0.0262236653807
3 7:0.135947525533
3 8:0.863275277999
3 9:0.863148810167
3 10:0.181792676369
3 11:0.18121704871
4 5:0.219628410083
4 6:0.205607022129
4 7:0.317447735026
4 8:1.0
4 9:0.999888358072
4 10:0.350112960406
4 11:0.349172941918
5 6:0.0315944780672
5 7:0.117630459977
5 8:0.844314321753
5 9:0.844193974179
5 10:0.166973789646
5 11:0.16671211157
6 7:0.120059257368
6 8:0.843881769685
6 9:0.843759153206
6 10:0.165870683133
6 11:0.165061793906
7 8:0.750181123341
7 9:0.750214504128
7 10:0.0613229235227
7 11:0.0614303823331
8 9:0.00412270321841
8 10:0.733071494312
8 11:0.732836049422
9 10:0.733320380005
9 11:0.733079534762
10 11:0.00483374439571
</hsp>