sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A2111-A2130
X
>3KFU-N12-N8
X
>3F1G-A629-A731
X
>3R8N-A649-A751
X
>3OGE-A629-A731
X
>3OGY-A629-A731
X
>2J02-A629-A731
X
>3OHC-A629-A731
X
>3OHD-A629-A731
X
</seq>
<hsp>
0 1:0.56792577316
0 2:0.252502445732
0 3:0.602638388043
0 4:0.253057091819
0 5:0.248921117715
0 6:0.306631766693
0 7:0.291976238887
0 8:0.290478911338
1 2:0.704199085287
1 3:1.0
1 4:0.751472324321
1 5:0.747392246296
1 6:0.813067556069
1 7:0.77215621785
1 8:0.767763296217
2 3:0.390128579204
2 4:0.212720721409
2 5:0.202148488125
2 6:0.170821888095
2 7:0.191082095456
2 8:0.186282115489
3 4:0.463516362984
3 5:0.45627446304
3 6:0.397923653619
3 7:0.402314061466
3 8:0.399045135674
4 5:0.0140149725244
4 6:0.138470785157
4 7:0.104722006782
4 8:0.10671814538
5 6:0.134994987832
5 7:0.104367349386
5 8:0.105560601185
6 7:0.103576374113
6 8:0.105746604928
7 8:0.00877191682825
</hsp>