ClaRNA

Doublet Group distance statistics: 52283

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 A 0, 0.000, 0.000, 0.001, 0.001 max_d=0.001 avg_d=0.000 std_dev=0.000
C6 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
C5 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
C4 A 0, 0.000, 0.002, 0.005, 0.005 max_d=0.005 avg_d=0.002 std_dev=0.002
N3 A 0, 0.000, 0.002, 0.005, 0.005 max_d=0.005 avg_d=0.002 std_dev=0.002
C1' A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C2 A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
O3' A 0, 0.000, 0.007, 0.015, 0.015 max_d=0.015 avg_d=0.007 std_dev=0.007
O2 A 0, 0.000, 0.007, 0.015, 0.015 max_d=0.015 avg_d=0.007 std_dev=0.007
C3' A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
O4' A 0, 0.000, 0.010, 0.021, 0.021 max_d=0.021 avg_d=0.010 std_dev=0.010
C4' A 0, 0.000, 0.011, 0.023, 0.023 max_d=0.023 avg_d=0.011 std_dev=0.011
C5' A 0, 0.000, 0.012, 0.024, 0.024 max_d=0.024 avg_d=0.012 std_dev=0.012
N4 A 0, 0.000, 0.014, 0.028, 0.028 max_d=0.028 avg_d=0.014 std_dev=0.014
C2' A 0, 0.000, 0.014, 0.029, 0.029 max_d=0.029 avg_d=0.014 std_dev=0.014
C5' B 0, 0.000, 0.019, 0.037, 0.037 max_d=0.037 avg_d=0.019 std_dev=0.019
OP2 B 0, 0.000, 0.019, 0.037, 0.037 max_d=0.037 avg_d=0.019 std_dev=0.019
P B 0, 0.000, 0.022, 0.044, 0.044 max_d=0.044 avg_d=0.022 std_dev=0.022
O5' B 0, 0.000, 0.022, 0.045, 0.045 max_d=0.045 avg_d=0.022 std_dev=0.022
OP2 A 0, 0.000, 0.023, 0.047, 0.047 max_d=0.047 avg_d=0.023 std_dev=0.023
O5' A 0, 0.000, 0.024, 0.049, 0.049 max_d=0.049 avg_d=0.024 std_dev=0.024
C5 B 0, 0.000, 0.024, 0.049, 0.049 max_d=0.049 avg_d=0.024 std_dev=0.024
N6 B 0, 0.000, 0.025, 0.051, 0.051 max_d=0.051 avg_d=0.025 std_dev=0.025
C4 B 0, 0.000, 0.026, 0.053, 0.053 max_d=0.053 avg_d=0.026 std_dev=0.026
C6 B 0, 0.000, 0.027, 0.054, 0.054 max_d=0.054 avg_d=0.027 std_dev=0.027
N7 B 0, 0.000, 0.027, 0.055, 0.055 max_d=0.055 avg_d=0.027 std_dev=0.027
O2' A 0, 0.000, 0.027, 0.055, 0.055 max_d=0.055 avg_d=0.027 std_dev=0.027
C4' B 0, 0.000, 0.028, 0.056, 0.056 max_d=0.056 avg_d=0.028 std_dev=0.028
C3' B 0, 0.000, 0.029, 0.057, 0.057 max_d=0.057 avg_d=0.029 std_dev=0.029
C8 B 0, 0.000, 0.029, 0.058, 0.058 max_d=0.058 avg_d=0.029 std_dev=0.029
N3 B 0, 0.000, 0.030, 0.060, 0.060 max_d=0.060 avg_d=0.030 std_dev=0.030
N9 B 0, 0.000, 0.030, 0.061, 0.061 max_d=0.061 avg_d=0.030 std_dev=0.030
N1 B 0, 0.000, 0.031, 0.062, 0.062 max_d=0.062 avg_d=0.031 std_dev=0.031
P A 0, 0.000, 0.032, 0.063, 0.063 max_d=0.063 avg_d=0.032 std_dev=0.032
C2 B 0, 0.000, 0.033, 0.065, 0.065 max_d=0.065 avg_d=0.033 std_dev=0.033
O3' B 0, 0.000, 0.033, 0.066, 0.066 max_d=0.066 avg_d=0.033 std_dev=0.033
O4' B 0, 0.000, 0.033, 0.066, 0.066 max_d=0.066 avg_d=0.033 std_dev=0.033
O2' B 0, 0.000, 0.035, 0.070, 0.070 max_d=0.070 avg_d=0.035 std_dev=0.035
C2' B 0, 0.000, 0.036, 0.072, 0.072 max_d=0.072 avg_d=0.036 std_dev=0.036
C1' B 0, 0.000, 0.037, 0.073, 0.073 max_d=0.073 avg_d=0.037 std_dev=0.037
OP1 B 0, 0.000, 0.037, 0.074, 0.074 max_d=0.074 avg_d=0.037 std_dev=0.037
OP1 A 0, 0.000, 0.037, 0.075, 0.075 max_d=0.075 avg_d=0.037 std_dev=0.037

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C2 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C5' 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
N4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O2 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.01 0.01 0.00 0.01
O2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.00 0.01 0.01 0.01
O3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O5' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00
OP1 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00
OP2 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
P 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01
C2 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00
C5' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.01
N3 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01
N4 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.01
O2 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01
O2' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01
O3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01
O4' 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00
O5' 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00
OP1 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.01
OP2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00
P 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.01

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.02 0.01 0.01
C2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01
C5' 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.01 0.01
C8 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.01 0.01
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01
N6 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.01 0.02 0.02 0.02
N7 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.01 0.01
N9 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01
O2' 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00
O3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
O4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.02 0.01 0.01
O5' 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00
OP1 0.02 0.02 0.01 0.01 0.02 0.01 0.02 0.01 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.01 0.00 0.02 0.01 0.00 0.00 0.00
OP2 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00
P 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00