sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3G78-A259-A105
X
>3R8T-A382-A385
X
>1N32-A1298-A1198
X
>2VQF-A1298-A1198
X
>1XMQ-A1293-A1193
X
>2VQE-A1298-A1198
X
>2UXC-A1298-A1198
X
>2UUB-A1298-A1198
X
>2UUA-A1298-A1198
X
>1FJG-A1298-A1198
X
</seq>
<hsp>
0 1:0.999998981231
0 2:0.529959451178
0 3:0.558845395044
0 4:0.531770108503
0 5:0.553455296885
0 6:0.543716920655
0 7:0.530787960337
0 8:0.519361806164
0 9:0.533876778082
1 2:0.554014845172
1 3:0.532872585227
1 4:0.553419295497
1 5:0.538425264206
1 6:0.54506995574
1 7:0.556773728333
1 8:0.562316926966
1 9:0.552346517374
2 3:0.040653211892
2 4:0.0161532278
2 5:0.0398801551545
2 6:0.0293195450124
2 7:0.0214742065826
2 8:0.0203500711752
2 9:0.0189677272286
3 4:0.0409597895636
3 5:0.0173720618241
3 6:0.0258989540393
3 7:0.0358225812074
3 8:0.052204379056
3 9:0.0372938899143
4 5:0.0369755723346
4 6:0.0247987286617
4 7:0.0264625210914
4 8:0.0264422733103
4 9:0.0232659901267
5 6:0.0146254589961
5 7:0.0309012415171
5 8:0.0459694546218
5 9:0.0316606068468
6 7:0.0241591872041
6 8:0.0336306895836
6 9:0.0239800838115
7 8:0.0248912516951
7 9:0.0162897295424
8 9:0.0247207672509
</hsp>