sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2NOK-B13-B12
X
>3OHJ-A1299-A1297
X
>3OHK-A1299-A1297
X
>2QA4-032-0172
X
>3KNH-A1370-V5
X
>3F1E-A1379-V3
X
>3F1G-A1379-V3
X
>2J02-A1379-X6
X
</seq>
<hsp>
0 1:0.409302885422
0 2:0.413782741913
0 3:0.451945087271
0 4:0.658637825107
0 5:0.724358017686
0 6:0.719773623232
0 7:0.76512034179
1 2:0.00765069777577
1 3:0.647263502552
1 4:0.367489929184
1 5:0.38153268503
1 6:0.379883885564
1 7:0.43196575849
2 3:0.651461150502
2 4:0.365091098916
2 5:0.377941853508
2 6:0.376380653043
2 7:0.428556807843
3 4:0.887071197122
3 5:0.942232961586
3 6:0.94059279421
3 7:1.0
4 5:0.13270044851
4 6:0.127071636469
4 7:0.161409332154
5 6:0.00940346295312
5 7:0.0692286503316
6 7:0.0667411911751
</hsp>