sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X44-X190
X
>3CCJ-032-0172
X
>3R8S-A1128-A1131
X
>3R8T-A1128-A1131
X
>1XMQ-A362-A378
X
>2UUA-A362-A378
X
>2UXC-A362-A378
X
>1FJG-A362-A378
X
</seq>
<hsp>
0 1:0.0910235370632
0 2:0.573520954207
0 3:0.566864583794
0 4:0.930908468278
0 5:0.91774197483
0 6:0.904463746163
0 7:0.922338658905
1 2:0.596540231153
1 3:0.586991065853
1 4:0.99999862402
1 5:0.985690129004
1 6:0.972047786316
1 7:0.991093414042
2 3:0.0413488344513
2 4:0.702766020302
2 5:0.681577591649
2 6:0.676180441654
2 7:0.695139692942
3 4:0.73052070493
3 5:0.708796660666
3 6:0.703604586535
3 7:0.722819084174
4 5:0.0390670233979
4 6:0.0440750429344
4 7:0.0245397724819
5 6:0.0400477907599
5 7:0.0264018689799
6 7:0.0444734190802
</hsp>