sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3P59-F8-F6
X
>2ZJR-X1265-X1263
X
>3OHZ-A1299-A1297
X
>3OI1-A1299-A1297
X
>3F1H-A1369-A1367
X
>3F1F-A1369-A1367
X
>2J03-A1299-A1297
X
>2J01-A1299-A1297
X
</seq>
<hsp>
0 1:1.0
0 2:0.703747134631
0 3:0.706501116941
0 4:0.973336658346
0 5:0.945059570839
0 6:0.866395902325
0 7:0.878031691671
1 2:0.465037760507
1 3:0.480118381842
1 4:0.27163855932
1 5:0.259310639463
1 6:0.324784237526
1 7:0.31416940429
2 3:0.0439541537756
2 4:0.415254680453
2 5:0.380231252071
2 6:0.297676183859
2 7:0.317500047019
3 4:0.411278135615
3 5:0.377075902446
3 6:0.315169801364
3 7:0.335858721374
4 5:0.0499549998629
4 6:0.36525389132
4 7:0.369144430847
5 6:0.34352643356
5 7:0.349383136557
6 7:0.0290391258804
</hsp>