sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A1282-A1281
X
>2J01-A1282-A1281
X
>3U5F-6440-6455
X
>2J03-A1083-A1086
X
>2J01-A1083-A1086
X
>2VQF-A109-A226
X
>2J02-A109-A226
X
>2J00-A109-A226
X
</seq>
<hsp>
0 1:0.00468973470159
0 2:0.789777409072
0 3:0.855885203382
0 4:0.856614542253
0 5:0.870293026485
0 6:0.888724923525
0 7:0.889859562203
1 2:0.789169879622
1 3:0.855401807506
1 4:0.856140106321
1 5:0.869915922434
1 6:0.888470630259
1 7:0.889607902988
2 3:0.856072852533
2 4:0.858039796776
2 5:0.940592316831
2 6:0.999903042232
2 7:0.999999003233
3 4:0.00499193997448
3 5:0.131366097901
3 6:0.195979247773
3 7:0.194800630082
4 5:0.130437431822
4 6:0.194911695083
4 7:0.193703172378
5 6:0.0790965767656
5 7:0.0787108096789
6 7:0.00428537290114
</hsp>