sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3PDR-X71-X35
X
>3R8T-A1282-A1281
X
>3OHZ-A1294-A1293
X
>3OHJ-A1294-A1293
X
>3OHK-A1294-A1293
X
>3OH5-A1294-A1293
X
</seq>
<hsp>
0 1:0.999999545968
0 2:0.608173996549
0 3:0.634342359173
0 4:0.634755456283
0 5:0.632705745674
1 2:0.635379779107
1 3:0.618624880543
1 4:0.623670877544
1 5:0.62403415366
2 3:0.0500714152935
2 4:0.045447897566
2 5:0.0438197673553
3 4:0.015901119828
3 5:0.0205640865477
4 5:0.0212913082251
</hsp>