sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-01111-01110
X
>3R8T-A1041-A1040
X
>3G71-088-087
X
>1YJ9-088-087
X
>3CCL-038-037
X
>1YJN-088-087
X
>1VQN-088-087
X
>3CMA-088-087
X
>3CME-088-087
X
>2OTJ-088-087
X
>1VQ8-088-087
X
</seq>
<hsp>
0 1:0.9720640201
0 2:0.502988020814
0 3:0.470709522463
0 4:0.773154793664
0 5:0.704771784984
0 6:0.57956883491
0 7:0.703408432065
0 8:0.639284738667
0 9:0.641166236428
0 10:0.630882040452
1 2:0.725973086842
1 3:0.656095525131
1 4:0.986935964311
1 5:0.749763985597
1 6:0.873058339775
1 7:0.89661080038
1 8:0.957760532008
1 9:0.753003178007
1 10:1.0
2 3:0.318425619896
2 4:0.535069184995
2 5:0.28489907589
2 6:0.2546782196
2 7:0.303505817122
2 8:0.300721718285
2 9:0.242774404911
2 10:0.381232152559
3 4:0.747544984104
3 5:0.389470453191
3 6:0.509254439116
3 7:0.578010301259
3 8:0.587962833731
3 9:0.376721263264
3 10:0.622628909537
4 5:0.523787009306
4 6:0.309045414344
4 7:0.437305437565
4 8:0.369780871091
4 9:0.463875241361
4 10:0.288290245421
5 6:0.327694115269
5 7:0.353245445377
5 8:0.382363332368
5 9:0.114346623297
5 10:0.428804605106
6 7:0.212592781194
6 8:0.151543584265
6 9:0.252123806679
6 10:0.148063509315
7 8:0.190920653988
7 9:0.303012829954
7 10:0.246538433705
8 9:0.333738074078
8 10:0.172375766812
9 10:0.350871859985
</hsp>