sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQM-0783-0782
X
>1VQL-0783-0782
X
>2J02-A1308-A1307
X
>3CD6-0783-0782
X
>3G71-0783-0782
X
>2OTJ-0783-0782
X
>1K9M-A783-A782
X
>1JJ2-0783-0782
X
>1S72-0783-0782
X
>1YIJ-0783-0782
X
>3CCR-0783-0782
X
</seq>
<hsp>
0 1:0.19525184693
0 2:0.807603716446
0 3:0.607213157721
0 4:0.392711893609
0 5:0.398301791822
0 6:0.493674779739
0 7:0.255030580947
0 8:0.269559039493
0 9:0.448431185133
0 10:0.81287926846
1 2:0.821425787753
1 3:0.621594701143
1 4:0.321109361053
1 5:0.526076574865
1 6:0.483715741676
1 7:0.221869087013
1 8:0.235867207929
1 9:0.481194909255
1 10:0.74875332253
2 3:0.707858397748
2 4:0.79012009512
2 5:0.884733761763
2 6:0.99997057206
2 7:0.856018624728
2 8:0.891903538751
2 9:0.690734821667
2 10:0.973767725248
3 4:0.495983591043
3 5:0.656234672977
3 6:0.510040866299
3 7:0.546095299671
3 8:0.583401517169
3 9:0.331456139319
3 10:0.881417180514
4 5:0.487187899708
4 6:0.431155557031
4 7:0.274579007819
4 8:0.309843864065
4 9:0.374007704012
4 10:0.54331161267
5 6:0.507019688248
5 7:0.420008020388
5 8:0.433613452956
5 9:0.428910919316
5 10:0.733281796013
6 7:0.354162983003
6 8:0.366324691858
6 9:0.365120217408
6 10:0.765318686277
7 8:0.0523941920033
7 9:0.36387541291
7 10:0.667386033955
8 9:0.397085187927
8 10:0.679254224573
9 10:0.676614476619
</hsp>