sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2R7W-X4-X3
X
>2R7R-X4-X3
X
>3CCR-01120-01119
X
>1YIT-01120-01119
X
>1VQ4-01120-01119
X
>1YI2-01120-01119
X
>1JJ2-01120-01119
X
>1K8A-A1120-A1119
X
>1QVG-01120-01119
X
</seq>
<hsp>
0 1:0.0123883108904
0 2:0.980077265723
0 3:0.977922609647
0 4:0.95258033372
0 5:0.979862128159
0 6:0.995235667387
0 7:0.985787108077
0 8:0.96572932085
1 2:0.983584249238
1 3:0.982596556433
1 4:0.957552234975
1 5:0.98447057207
1 6:0.999999843898
1 7:0.990558670402
1 8:0.970563112434
2 3:0.139720899786
2 4:0.161113888899
2 5:0.129487731593
2 6:0.161190636237
2 7:0.160517749966
2 8:0.16035755386
3 4:0.0425508915961
3 5:0.0515015169168
3 6:0.125740612444
3 7:0.116198714625
3 8:0.100259525981
4 5:0.0662003183794
4 6:0.127336318548
4 7:0.115491750811
4 8:0.091967920129
5 6:0.122585762975
5 7:0.11182730633
5 8:0.0948373194795
6 7:0.0241855842727
6 8:0.0511637347791
7 8:0.0361105028813
</hsp>