sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FFK-01110-01109
X
>1M90-A1111-A1110
X
>1K8A-A1111-A1110
X
>1KD1-A1111-A1110
X
>3CC2-01111-01110
X
>3F1F-A1067-A1066
X
>3CCU-01111-01110
X
>3CPW-01111-01110
X
</seq>
<hsp>
0 1:0.701565603999
0 2:0.87178179126
0 3:0.900271798433
0 4:0.716501309335
0 5:0.999996224098
0 6:0.977864166067
0 7:0.739727623354
1 2:0.371571734189
1 3:0.369513132605
1 4:0.328049102834
1 5:0.857817220443
1 6:0.596694784853
1 7:0.359646525654
2 3:0.0852909642372
2 4:0.514111017074
2 5:0.896902609893
2 6:0.416834832227
2 7:0.308190301358
3 4:0.523542340687
3 5:0.901348619481
3 6:0.414671555546
3 7:0.298233799741
4 5:0.837327666592
4 6:0.544284506391
4 7:0.438218190073
5 6:0.802159794384
5 7:0.719830433471
6 7:0.332106413625
</hsp>