sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CPW-0495-0303
X
>3I56-01120-01119
X
>1VQ6-01120-01119
X
>3OHC-A1167-A1166
X
>3OHD-A1167-A1166
X
>1VQL-01120-01119
X
>1VQ9-01120-01119
X
>3CCJ-01120-01119
X
</seq>
<hsp>
0 1:1.0
0 2:0.993571971589
0 3:0.897780203597
0 4:0.89976298638
0 5:0.969755705708
0 6:0.989058460805
0 7:0.99584261431
1 2:0.0198141873382
1 3:0.26639082883
1 4:0.266463050235
1 5:0.0390265380357
1 6:0.04563243034
1 7:0.098735112978
2 3:0.257052209049
2 4:0.25707882129
2 5:0.0331809618935
2 6:0.0374477758139
2 7:0.0881568089292
3 4:0.00302828755682
3 5:0.244601011433
3 6:0.252091767527
3 7:0.185628569651
4 5:0.244917093547
4 6:0.252145016962
4 7:0.185248526946
5 6:0.0348873470624
5 7:0.0909946303935
6 7:0.0882621635586
</hsp>