sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A1033-A1032
X
>1HC8-D35-D5
X
>1QA6-C35-C5
X
>3F1F-A1105-A1075
X
>3F1H-A301-A300
X
>3R8O-A446-A445
X
>2OTL-02541-02540
X
>1YIT-02541-02540
X
</seq>
<hsp>
0 1:0.99947002921
0 2:0.979046800588
0 3:0.999999923642
0 4:0.776963690731
0 5:0.73191729083
0 6:0.728314672133
0 7:0.720551624613
1 2:0.0368435363115
1 3:0.115587345101
1 4:0.530048509849
1 5:0.586387059411
1 6:0.578829274957
1 7:0.585031477004
2 3:0.0985167932368
2 4:0.518172646011
2 5:0.574455078984
2 6:0.568116947194
2 7:0.573742058048
3 4:0.453449429409
3 5:0.519500114406
3 6:0.526332890315
3 7:0.528145651144
4 5:0.0950640757824
4 6:0.103298638837
4 7:0.0986632611175
5 6:0.0495567890715
5 7:0.0483274159385
6 7:0.0217474827548
</hsp>