sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-51702-51701
X
>3OHC-A1251-A1250
X
>2UUB-A1251-A1250
X
>3FTM-A5-A4
X
>2UXC-A1251-A1250
X
>2D2L-B7-B6
X
>3U5B-2187-2186
X
>3F1H-A1742-A1741
X
</seq>
<hsp>
0 1:0.798598639669
0 2:0.757740520125
0 3:0.800195696991
0 4:0.768193634651
0 5:0.764392695139
0 6:0.655389100857
0 7:0.999999730187
1 2:0.0589994342391
1 3:0.119038773444
1 4:0.0433893369071
1 5:0.100083342707
1 6:0.205238279034
1 7:0.504442653765
2 3:0.135007378238
2 4:0.0409071089675
2 5:0.0903041016204
2 6:0.15403749783
2 7:0.535886655439
3 4:0.13536064973
3 5:0.091750618128
3 6:0.256478683134
3 7:0.409921249483
4 5:0.0888280679284
4 6:0.166202473705
4 7:0.52884324154
5 6:0.182132322751
5 7:0.488220135523
6 7:0.645767948462
</hsp>