sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1N32-A1167-A1166
X
>2ZJR-X1274-X1273
X
>3OGY-A1167-A1166
X
>3FTF-D11-D10
X
>1VQ4-0553-0552
X
>2QA4-01529-01528
X
</seq>
<hsp>
0 1:0.397021839571
0 2:0.341695702405
0 3:0.830035575342
0 4:0.382272885541
0 5:0.282997616961
1 2:0.497625900783
1 3:0.601327591499
1 4:0.0794606161711
1 5:0.145308523726
2 3:0.999995160849
2 4:0.511936915049
2 5:0.466424185943
3 4:0.631735664448
3 5:0.645282004025
4 5:0.120456827759
</hsp>