sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCV-0180-0415
X
>3G71-0180-0415
X
>3R8T-A1559-A1558
X
>1VQP-0180-0415
X
>1VQM-0180-0415
X
>3KNI-A1506-A1505
X
>3CCM-0180-0415
X
>3F1H-A1585-A1584
X
>3CMA-0180-0415
X
>3KNI-A2423-A2422
X
</seq>
<hsp>
0 1:0.0385943725997
0 2:0.857226892688
0 3:0.0275051105865
0 4:0.0238376909462
0 5:0.987570449845
0 6:0.0261751880943
0 7:0.884839290116
0 8:0.0359356787483
0 9:0.626005475507
1 2:0.843290498823
1 3:0.0399394678611
1 4:0.0391832886187
1 5:0.975311256393
1 6:0.0431483733128
1 7:0.871479054224
1 8:0.041551448355
1 9:0.610185731066
2 3:0.867948403262
2 4:0.862613784409
2 5:0.174950591525
2 6:0.865035680433
2 7:0.0844061561133
2 8:0.865960661113
2 9:0.261628360628
3 4:0.0103507494168
3 5:0.999999668771
3 6:0.0210798541962
3 7:0.896757090233
3 8:0.0216374664444
3 9:0.636830633069
4 5:0.994041724579
4 6:0.0167912684549
4 7:0.890939128046
4 8:0.020758780324
4 9:0.63214019265
5 6:0.996609899259
5 7:0.139227520737
5 8:0.996034092193
5 9:0.397294980308
6 7:0.893251579391
6 8:0.0289826683692
6 9:0.636209661526
7 8:0.894138690257
7 9:0.286371193793
8 9:0.634949546542
</hsp>