sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3BNN-B5-B4
X
>3BNQ-B7-B6
X
>3F1E-Z76-Z75
X
>3F1G-Z76-Z75
X
>3BNN-D5-D4
X
>3BNO-B5-B4
X
>3BNO-D5-D4
X
>3BNR-D5-D4
X
>3BNS-D5-D4
X
</seq>
<hsp>
0 1:0.307628823442
0 2:0.991029484012
0 3:0.992591235595
0 4:0.0967878103265
0 5:0.136488392119
0 6:0.157813941785
0 7:0.344081857351
0 8:0.321750200369
1 2:0.924987161812
1 3:0.926993416779
1 4:0.30265395727
1 5:0.269023154202
1 6:0.402285085814
1 7:0.331829351697
1 8:0.222283438216
2 3:0.0091627010788
2 4:0.972284659021
2 5:0.945108920129
2 6:0.997989380865
2 7:0.895549203767
2 8:0.915711885419
3 4:0.974294448348
3 5:0.947072192708
3 6:0.999998439589
3 7:0.898681707428
3 8:0.918623136457
4 5:0.127316113513
4 6:0.113006615518
4 7:0.259597335039
4 8:0.257186171419
5 6:0.172059397432
5 7:0.287317169876
5 8:0.254422982697
6 7:0.305438165784
6 8:0.332252630982
7 8:0.126318339143
</hsp>