sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1Z43-A18-A17
X
>3KNK-A729-A728
X
>3P59-D5-D4
X
>3F1F-A566-A565
X
>3OHJ-A730-A729
X
>3AKZ-F73-F72
X
>3OHC-A1180-A1179
X
</seq>
<hsp>
0 1:0.321690866314
0 2:0.58149644759
0 3:0.952291197358
0 4:0.334628784956
0 5:0.591965609897
0 6:0.355567195054
1 2:0.596773767033
1 3:1.0
1 4:0.156812877138
1 5:0.57068122219
1 6:0.373405842104
2 3:0.441722679075
2 4:0.564257082042
2 5:0.113650583481
2 6:0.327965107394
3 4:0.978502949531
3 5:0.452665919988
3 6:0.691720550596
4 5:0.55508747609
4 6:0.381260051252
5 6:0.290889193799
</hsp>