sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A2659-A2658
X
>3KFU-M48-M47
X
>3KFU-N48-N47
X
>1FFK-01491-01490
X
>3KFU-L48-L47
X
>3R8S-A952-A950
X
</seq>
<hsp>
0 1:0.373099043165
0 2:0.375078343408
0 3:0.36837028135
0 4:0.396986339993
0 5:0.802346707021
1 2:0.00275872079459
1 3:0.573428698772
1 4:0.115079937825
1 5:0.734783102744
2 3:0.575535648262
2 4:0.113941256315
2 5:0.733941068849
3 4:0.633823719954
3 5:1.0
4 5:0.733506267326
</hsp>