sequences=30
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A110-A111
X
>1N8R-A103-A104
X
>3CCJ-0103-0104
X
>3U5D-4103-4104
X
>3U5H-8103-8104
X
>3OHJ-A110-A111
X
>3CXC-0103-0104
X
>1QVG-0103-0104
X
>3I56-0103-0104
X
>1Q86-A103-A104
X
>3G71-0103-0104
X
>3CCR-0103-0104
X
>2QEX-0103-0104
X
>3CCE-0103-0104
X
>3CD6-0103-0104
X
>3CMA-0103-0104
X
>1M90-A103-A104
X
>1VQ5-0103-0104
X
>3CC7-0103-0104
X
>3CCV-0103-0104
X
>3CC4-0103-0104
X
>3CCL-0103-0104
X
>1YJN-0103-0104
X
>1VQO-0103-0104
X
>3CCM-0103-0104
X
>3CPW-0103-0104
X
>1VQ7-0103-0104
X
>3R8S-A117-A118
X
>3CCS-0103-0104
X
>1VQ9-0103-0104
X
</seq>
<hsp>
0 1:0.658626531283
0 2:0.5570311348
0 3:1.0
0 4:0.823534990914
0 5:0.52733557373
0 6:0.752560624771
0 7:0.63050744516
0 8:0.705070773653
0 9:0.739452200643
0 10:0.796077658831
0 11:0.665141816165
0 12:0.959762668045
0 13:0.906806433646
0 14:0.850761195027
0 15:0.72073991383
0 16:0.879851620859
0 17:0.842823100521
0 18:0.705607730615
0 19:0.849082853096
0 20:0.909800333442
0 21:0.844265018436
0 22:0.728389498919
0 23:0.947065413535
0 24:0.890598552462
0 25:0.809473674332
0 26:0.910251942903
0 27:0.437253144172
0 28:0.77338939484
0 29:0.926754202685
1 2:0.376102101037
1 3:0.467149996577
1 4:0.332961143799
1 5:0.497746209813
1 6:0.196861192421
1 7:0.267479689954
1 8:0.168309244141
1 9:0.198043689838
1 10:0.18972974023
1 11:0.291510948194
1 12:0.340248401408
1 13:0.322446813044
1 14:0.227241936358
1 15:0.354595120597
1 16:0.30818880393
1 17:0.25327956088
1 18:0.272825838399
1 19:0.236993565758
1 20:0.284539244127
1 21:0.272604906595
1 22:0.233703870611
1 23:0.322495587013
1 24:0.286901532976
1 25:0.258137953341
1 26:0.291551852515
1 27:0.384356582517
1 28:0.215990473452
1 29:0.346878869178
2 3:0.795943073241
2 4:0.627031460807
2 5:0.572589207211
2 6:0.401959481444
2 7:0.35910380419
2 8:0.324860859466
2 9:0.489346657242
2 10:0.454821776469
2 11:0.464153680699
2 12:0.535991708118
2 13:0.525521661331
2 14:0.453269226904
2 15:0.398345258256
2 16:0.472195056282
2 17:0.434061651247
2 18:0.399073063328
2 19:0.464985517847
2 20:0.487164575027
2 21:0.464268031694
2 22:0.373471450371
2 23:0.580539249456
2 24:0.527866312634
2 25:0.439400408734
2 26:0.522392509679
2 27:0.303723897704
2 28:0.45693840231
2 29:0.511059803957
3 4:0.327615851174
3 5:0.640637699281
3 6:0.45348841219
3 7:0.518494485798
3 8:0.501287223395
3 9:0.334926311397
3 10:0.377946957723
3 11:0.467028591798
3 12:0.484988981093
3 13:0.388338892049
3 14:0.436950822572
3 15:0.593580709399
3 16:0.485695037887
3 17:0.446118785832
3 18:0.517796876779
3 19:0.407976090285
3 20:0.453354948031
3 21:0.442028952539
3 22:0.526414186303
3 23:0.365703179052
3 24:0.385220993229
3 25:0.45480121322
3 26:0.396981006477
3 27:0.735918600662
3 28:0.472759454562
3 29:0.509420904461
4 5:0.460328411444
4 6:0.348029479462
4 7:0.367511184774
4 8:0.343112542006
4 9:0.217692841079
4 10:0.257875265254
4 11:0.36298690088
4 12:0.470529927222
4 13:0.343199617487
4 14:0.332754100093
4 15:0.418838446356
4 16:0.417435483501
4 17:0.384301069867
4 18:0.2982296448
4 19:0.311888299351
4 20:0.403297078027
4 21:0.297584120026
4 22:0.373959766466
4 23:0.340954286637
4 24:0.316103327193
4 25:0.345775444735
4 26:0.341044782866
4 27:0.568860692993
4 28:0.338897320445
4 29:0.453033639505
5 6:0.54478641394
5 7:0.393816183839
5 8:0.502010217658
5 9:0.453979164126
5 10:0.522898211409
5 11:0.399529910668
5 12:0.760463754628
5 13:0.608967713112
5 14:0.605639435039
5 15:0.441064803537
5 16:0.658397302761
5 17:0.609979381334
5 18:0.400356591415
5 19:0.584535876659
5 20:0.677109179776
5 21:0.550234153236
5 22:0.523456542046
5 23:0.658995285859
5 24:0.601325569205
5 25:0.542667357776
5 26:0.638146922735
5 27:0.379009042369
5 28:0.553926518283
5 29:0.688063075095
6 7:0.205627825869
6 8:0.150445941709
6 9:0.207379124304
6 10:0.16392252411
6 11:0.289862010063
6 12:0.27064872542
6 13:0.237410650359
6 14:0.20499488028
6 15:0.350609980522
6 16:0.264923182525
6 17:0.175576069668
6 18:0.290182365735
6 19:0.183469046005
6 20:0.242206917193
6 21:0.246984693728
6 22:0.273685767686
6 23:0.290575215864
6 24:0.26171683242
6 25:0.236060203752
6 26:0.251623175083
6 27:0.475387782998
6 28:0.320247460191
6 29:0.335143757313
7 8:0.211513414603
7 9:0.244838332317
7 10:0.256667718844
7 11:0.226804666684
7 12:0.45044152576
7 13:0.328227521149
7 14:0.334636160153
7 15:0.290805835214
7 16:0.39232810791
7 17:0.304856484051
7 18:0.252649592112
7 19:0.310679996293
7 20:0.391239784801
7 21:0.324322078083
7 22:0.332892282002
7 23:0.420676806901
7 24:0.361465800592
7 25:0.29574452384
7 26:0.382979248081
7 27:0.393874112874
7 28:0.393761238878
7 29:0.439790146758
8 9:0.196540568414
8 10:0.149837900339
8 11:0.319903006243
8 12:0.295492787072
8 13:0.255720593701
8 14:0.179472569124
8 15:0.310355245124
8 16:0.216644453137
8 17:0.168973532265
8 18:0.210294865509
8 19:0.16304619159
8 20:0.237025853495
8 21:0.187600935781
8 22:0.159538637922
8 23:0.308046009027
8 24:0.263982060012
8 25:0.223299928211
8 26:0.234103075074
8 27:0.389412270765
8 28:0.240596398768
8 29:0.324561540177
9 10:0.140922490652
9 11:0.291728028995
9 12:0.345131029574
9 13:0.252639026477
9 14:0.240375584278
9 15:0.381510693313
9 16:0.277153412164
9 17:0.231008130737
9 18:0.259999971346
9 19:0.196117996172
9 20:0.296382618607
9 21:0.231840820203
9 22:0.246477781754
9 23:0.293701885793
9 24:0.259965820817
9 25:0.271597890702
9 26:0.244708053854
9 27:0.46254011462
9 28:0.263505155184
9 29:0.384796313908
10 11:0.28804143495
10 12:0.266850239495
10 13:0.152882650611
10 14:0.111889348825
10 15:0.310442603885
10 16:0.229934794162
10 17:0.149048676685
10 18:0.215280902967
10 19:0.0934707919285
10 20:0.180372163637
10 21:0.128449295892
10 22:0.225164822495
10 23:0.190433605672
10 24:0.145202837734
10 25:0.159048270526
10 26:0.152489404025
10 27:0.481627686615
10 28:0.212437863144
10 29:0.258988461794
11 12:0.495861810408
11 13:0.333204373018
11 14:0.353078833901
11 15:0.255612036498
11 16:0.473942516036
11 17:0.368123996586
11 18:0.2915183538
11 19:0.360403638156
11 20:0.40469463689
11 21:0.354910982559
11 22:0.396368249107
11 23:0.375645262259
11 24:0.317865541745
11 25:0.249632130649
11 26:0.403104978098
11 27:0.428731994568
11 28:0.368902579257
11 29:0.385780255064
12 13:0.253333821555
12 14:0.207741145058
12 15:0.511755749995
12 16:0.170880251239
12 17:0.170374918984
12 18:0.441935566659
12 19:0.196789395656
12 20:0.144558415593
12 21:0.281099272683
12 22:0.318026917686
12 23:0.245602378878
12 24:0.274123105068
12 25:0.326647797631
12 26:0.178221833574
12 27:0.634261720451
12 28:0.337480980845
12 29:0.296170724475
13 14:0.159362807141
13 15:0.341485087105
13 16:0.254797458109
13 17:0.156295722152
13 18:0.296503690415
13 19:0.141770155809
13 20:0.165555043311
13 21:0.163683187775
13 22:0.30911754662
13 23:0.154602341518
13 24:0.117768769896
13 25:0.171146329516
13 26:0.143735945176
13 27:0.578397460182
13 28:0.29805565355
13 29:0.219351427831
14 15:0.32931792348
14 16:0.201567077991
14 17:0.137798666271
14 18:0.25828851168
14 19:0.0870093830062
14 20:0.0913632577685
14 21:0.115399143568
14 22:0.225250794807
14 23:0.146264574387
14 24:0.122514239077
14 25:0.14829911993
14 26:0.111044447715
14 27:0.512010022784
14 28:0.193956869373
14 29:0.180872631614
15 16:0.466355359577
15 17:0.376353390454
15 18:0.185013005078
15 19:0.354709638082
15 20:0.389775195796
15 21:0.295373492353
15 22:0.370144880627
15 23:0.385764860233
15 24:0.315464784226
15 25:0.217155705714
15 26:0.399733060033
15 27:0.404348253672
15 28:0.355318608262
15 29:0.330761768462
16 17:0.136603621724
16 18:0.359253499119
16 19:0.153965663926
16 20:0.185066839683
16 21:0.213636207783
16 22:0.193048246714
16 23:0.282866679196
16 24:0.283742152714
16 25:0.316687556461
16 26:0.154116212034
16 27:0.535340867414
16 28:0.279738294528
16 29:0.3346829761
17 18:0.302385911289
17 19:0.0920504010127
17 20:0.129791515923
17 21:0.171771507165
17 22:0.217502474528
17 23:0.222589225118
17 24:0.200371296717
17 25:0.220209802268
17 26:0.127495634411
17 27:0.508426836343
17 28:0.2654768106
17 29:0.260253741706
18 19:0.256908369751
18 20:0.33750203072
18 21:0.191242980809
18 22:0.245238420295
18 23:0.341168539626
18 24:0.274619477591
18 25:0.219980947768
18 26:0.312411978346
18 27:0.378009472581
18 28:0.260255675782
18 29:0.345069261885
19 20:0.125385804083
19 21:0.1060984245
19 22:0.204452900112
19 23:0.177985231019
19 24:0.155702605763
19 25:0.194325176222
19 26:0.0871573843829
19 27:0.512240858033
19 28:0.224520182081
19 29:0.24755977043
20 21:0.175292489734
20 22:0.264969037146
20 23:0.142790285811
20 24:0.151656272782
20 25:0.197364589231
20 26:0.101734400156
20 27:0.563350172795
20 28:0.241937552343
20 29:0.166984228185
21 22:0.196289306269
21 23:0.190343762919
21 24:0.146619063704
21 25:0.16718436673
21 26:0.131858586576
21 27:0.489940649921
21 28:0.198959940551
21 29:0.232171887341
22 23:0.328626219241
22 24:0.296522971767
22 25:0.284002464688
22 26:0.234842367815
22 27:0.374230033717
22 28:0.183208782582
22 29:0.347411795096
23 24:0.0844242918609
23 25:0.184686590528
23 26:0.136485279418
23 27:0.607717814456
23 28:0.252362935376
23 29:0.166916118772
24 25:0.121976125884
24 26:0.142695700368
24 27:0.555918698185
24 28:0.223212826668
24 29:0.152362272682
25 26:0.216987898114
25 27:0.477322309057
25 28:0.232484541236
25 29:0.160550618629
26 27:0.562079476841
26 28:0.22426469206
26 29:0.225209405342
27 28:0.432364382879
27 29:0.575789349591
28 29:0.264798228167
</hsp>