sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHC-A1146-A1145
X
>3OHD-A1146-A1145
X
>3R8T-A643-A642
X
>2J02-A28-A27
X
>3OGE-A28-A27
X
>3OGY-A28-A27
X
>3OI1-A1793-A1792
X
>3OHZ-A1793-A1792
X
>2VQE-A28-A27
X
>3R8T-A1463-A1462
X
>3U5B-2197-2196
X
</seq>
<hsp>
0 1:0.00378745942047
0 2:0.175062115399
0 3:0.123695848851
0 4:0.137063523166
0 5:0.140232495475
0 6:0.302161246278
0 7:0.303871199005
0 8:0.111054140269
0 9:0.297818528803
0 10:0.998892787088
1 2:0.174850532255
1 3:0.123522756454
1 4:0.136768004724
1 5:0.140030907085
1 6:0.303849463543
1 7:0.30557065993
1 8:0.111930815262
1 9:0.299173843208
1 10:0.99999878178
2 3:0.0945384127549
2 4:0.0740362173933
2 5:0.0835206111642
2 6:0.211381379033
2 7:0.211544452547
2 8:0.124273918529
2 9:0.165440953273
2 10:0.902955585909
3 4:0.0262607071943
3 5:0.0250571362484
3 6:0.266892135633
3 7:0.266897806406
3 8:0.095202546967
3 9:0.21348244696
3 10:0.974369803352
4 5:0.0176629191648
4 6:0.254797163385
4 7:0.25477238112
4 8:0.0987413403783
4 9:0.201243342549
4 10:0.957990094474
5 6:0.262445537414
5 7:0.262303879698
5 8:0.108936651031
5 9:0.203996928659
5 10:0.969020709832
6 7:0.00898181372702
6 8:0.229675444145
6 9:0.139076005492
6 10:0.733723878829
7 8:0.229985415881
7 9:0.135461219346
7 10:0.733586809481
8 9:0.218098047805
8 10:0.92204501393
9 10:0.812383581397
</hsp>