sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A46-A45
X
>1N32-A1129-A1128
X
>1L8V-B104-B103
X
>2UUB-A1129-A1128
X
>3OH5-A1508-A1507
X
>3OH7-A1508-A1507
X
>2J03-B52-B51
X
>2J01-B52-B51
X
>3KNI-A1507-A1506
X
>3FOZ-D32-D31
X
</seq>
<hsp>
0 1:0.0951952059583
0 2:0.479025947287
0 3:0.0879753315773
0 4:0.952783582826
0 5:0.957309983512
0 6:0.473860473631
0 7:0.474574060928
0 8:0.930253489792
0 9:0.881979390558
1 2:0.527326181098
1 3:0.0262343007808
1 4:0.995721130244
1 5:1.0
1 6:0.511487944491
1 7:0.512318020643
1 8:0.973826507544
1 9:0.920914469291
2 3:0.523703164312
2 4:0.636207137174
2 5:0.642486785958
2 6:0.171680540898
2 7:0.170628938178
2 8:0.634863783543
2 9:0.533044543023
3 4:0.98662073625
3 5:0.990893651723
3 6:0.513099107485
3 7:0.513887600431
3 8:0.963923861663
3 9:0.912568060426
4 5:0.0108460724478
4 6:0.743408431607
4 7:0.74173273928
4 8:0.0606377268389
4 9:0.15880275653
5 6:0.748690502269
5 7:0.74701325715
5 8:0.0618907215897
5 9:0.162244422127
6 7:0.00269101768373
6 8:0.742948208797
6 9:0.637902444996
7 8:0.741321509476
7 9:0.636212413838
8 9:0.192561736005
</hsp>