sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A1603-A1602
X
>3KNI-A907-A906
X
>3R8S-A893-A892
X
>2J03-A1029-A1028
X
>2J01-A1029-A1028
X
>3OHJ-A1508-A1507
X
>2J03-A1508-A1507
X
>1GID-A11-A10
X
>3OHZ-A1508-A1507
X
>3G78-A190-A189
X
</seq>
<hsp>
0 1:0.379171258162
0 2:0.418753389307
0 3:0.578730257719
0 4:0.580950437246
0 5:0.488819839925
0 6:0.499960618785
0 7:0.489271900182
0 8:0.501688571869
0 9:0.425385094523
1 2:0.202394723439
1 3:0.428887988865
1 4:0.431630932333
1 5:0.708745613516
1 6:0.719013525926
1 7:0.249725787654
1 8:0.719176264849
1 9:0.109756019516
2 3:0.26949294382
2 4:0.272339593711
2 5:0.816444981126
2 6:0.823979043469
2 7:0.130007611953
2 8:0.82477095677
2 9:0.140194171707
3 4:0.00417145516253
3 5:0.991120861184
3 6:0.997623984724
3 7:0.210531860732
3 8:0.995848718897
3 9:0.337501612049
4 5:0.993545253974
4 6:1.0
4 7:0.213064996572
4 8:0.998270621417
4 9:0.340060518542
5 6:0.0491912952464
5 7:0.880251408576
5 8:0.0422430213246
5 9:0.786245627974
6 7:0.888181604986
6 8:0.0454621851464
6 9:0.795263888928
7 8:0.886629072882
7 9:0.145846312794
8 9:0.795055797403
</hsp>