sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1QA6-C39-C38
X
>3CD6-050-049
X
>1VQL-050-049
X
>3R8T-A345-A344
X
>3CCQ-050-049
X
>1GID-B116-B115
X
>1GID-A116-A115
X
>3OHZ-A358-A357
X
>2J01-A358-A357
X
>2J03-A358-A357
X
</seq>
<hsp>
0 1:0.94590235936
0 2:0.923103199128
0 3:0.317468662527
0 4:0.857506760234
0 5:0.458011622907
0 6:0.491832950508
0 7:0.667597164325
0 8:0.735382803972
0 9:0.747256818924
1 2:0.0798651056588
1 3:0.9623314638
1 4:0.145835753351
1 5:0.998635597822
1 6:0.999998424375
1 7:0.592033926902
1 8:0.73455513634
1 9:0.726051724165
2 3:0.937411474274
2 4:0.16592623362
2 5:0.993059571651
2 6:0.996629691772
2 7:0.574597230758
2 8:0.698866800379
2 9:0.689450214545
3 4:0.881049665012
3 5:0.371097237341
3 6:0.402976254711
3 7:0.575777703753
3 8:0.597686638639
3 9:0.613952699408
4 5:0.912890029761
4 6:0.910792781546
4 7:0.562680081457
4 8:0.724375119513
4 9:0.719907443654
5 6:0.0558541567883
5 7:0.58333989333
5 8:0.719702473917
5 9:0.733691240508
6 7:0.597710806252
6 8:0.744043758692
6 9:0.757992089824
7 8:0.265011271787
7 9:0.26792706151
8 9:0.0302802756033
</hsp>