sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A1320-A1321
X
>3F1H-A1320-A1321
X
>1XMQ-A844-A845
X
>2VQE-A844-A845
X
>3U5H-51267-51268
X
>3OH7-A1250-A1251
X
>3U5D-11261-11262
X
>3R8T-A1294-A1295
X
>3R8S-A1294-A1295
X
</seq>
<hsp>
0 1:0.0560571107554
0 2:0.780499301886
0 3:0.797643534645
0 4:0.68080730448
0 5:0.388215931867
0 6:0.873111819119
0 7:0.62454553765
0 8:0.889122619711
1 2:0.778146411964
1 3:0.788640971432
1 4:0.647446530806
1 5:0.348478794058
1 6:0.831483031919
1 7:0.602166631882
1 8:0.85053182892
2 3:0.230936191971
2 4:0.793980105714
2 5:0.787148108839
2 6:0.999987594388
2 7:0.44426815237
2 8:0.777507907633
3 4:0.76278852685
3 5:0.768141912248
3 6:0.958572922626
3 7:0.475767619744
3 8:0.777597640329
4 5:0.611060152552
4 6:0.329529271525
4 7:0.635329254849
4 8:0.59032793445
5 6:0.72111647798
5 7:0.470516153938
5 8:0.613653304291
6 7:0.788582150435
6 8:0.584582457651
7 8:0.478458299767
</hsp>