sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FG0-A300-A299
X
>2J03-A1495-A1494
X
>2ZJR-X2123-X2122
X
>1CVJ-R3-R2
X
>3KNI-A343-A342
X
>1CVJ-P3-P2
X
>3KNK-A343-A342
X
>2J03-A2238-A2237
X
>3OWZ-B70-B69
X
</seq>
<hsp>
0 1:0.45534576789
0 2:0.447627731299
0 3:0.457289566489
0 4:0.41567959202
0 5:0.439732918766
0 6:0.44372165265
0 7:1.0
0 8:0.966025127119
1 2:0.119836785763
1 3:0.359422587545
1 4:0.354551960874
1 5:0.343571340842
1 6:0.358233874585
1 7:0.824368986878
1 8:0.793676091229
2 3:0.31994682365
2 4:0.292554341397
2 5:0.303898585184
2 6:0.301420932395
2 7:0.817482369109
2 8:0.796239153671
3 4:0.108953160457
3 5:0.0361995998184
3 6:0.0984192533218
3 7:0.659858181561
3 8:0.653343877296
4 5:0.109013263742
4 6:0.0510020644009
4 7:0.717679410604
4 8:0.705175071557
5 6:0.105537554659
5 7:0.671854828563
5 8:0.663467169728
6 7:0.678013216835
6 8:0.668212711165
7 8:0.110800598678
</hsp>