sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J00-A1129-A1128
X
>2J02-A1129-A1128
X
>3R8O-A1150-A1149
X
>3U5B-21475-21474
X
>3U5H-52315-52314
X
>3U5F-61487-61486
X
>2VQF-A1129-A1128
X
</seq>
<hsp>
0 1:0.0110779643986
0 2:0.894494879118
0 3:0.900499757447
0 4:0.562291686298
0 5:0.994895973753
0 6:0.685362036207
1 2:0.896432889542
1 3:0.906627602505
1 4:0.56690645666
1 5:1.0
1 6:0.689825080277
2 3:0.974606512767
2 4:0.564420030962
2 5:0.966272152032
2 6:0.476825063463
3 4:0.678340575272
3 5:0.283660602246
3 6:0.705957858863
4 5:0.77246781073
4 6:0.400022338867
5 6:0.820545724772
</hsp>