sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1063-A1062
X
>2QA4-02210-02209
X
>1KD1-A2211-A2210
X
>1Q86-A2211-A2210
X
>1YJ9-02211-02210
X
>1YJN-02211-02210
X
>3U5D-12457-12456
X
</seq>
<hsp>
0 1:0.944737185073
0 2:0.950653808755
0 3:0.988611617495
0 4:0.982994778112
0 5:0.976635126392
0 6:1.0
1 2:0.0407114528816
1 3:0.0655732649413
1 4:0.0568622649137
1 5:0.0503528532482
1 6:0.0875840019146
2 3:0.0446508923812
2 4:0.0382418072884
2 5:0.0378974370535
2 6:0.0680236407891
3 4:0.00995912174098
3 5:0.023397128047
3 6:0.03627757396
4 5:0.0191385945636
4 6:0.0405099603776
5 6:0.0436315161449
</hsp>