sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-01433-01432
X
>1FFK-01386-01385
X
>2UUA-A163-A162
X
>1N32-A163-A162
X
>2UXC-A163-A162
X
>3KNH-A154-A153
X
>6MSF-S4-S3
X
>2UUB-A163-A162
X
>2J00-A818-A817
X
>2J02-A818-A817
X
>1F7Y-B10-B9
X
>1DK1-B10-B9
X
</seq>
<hsp>
0 1:0.0743127915227
0 2:0.429754055818
0 3:0.460712525347
0 4:0.475017512352
0 5:0.590279412649
0 6:0.611285603812
0 7:0.469648179351
0 8:0.790405378902
0 9:0.791212717338
0 10:0.317090324279
0 11:0.317615175382
1 2:0.461704093296
1 3:0.495784314209
1 4:0.512910630009
1 5:0.627774192423
1 6:0.622064830231
1 7:0.50681122957
1 8:0.821121772839
1 9:0.821977886374
1 10:0.316849701939
1 11:0.317634587318
2 3:0.0897451776627
2 4:0.0947177604321
2 5:0.259515094019
2 6:0.641481064479
2 7:0.0875406422701
2 8:0.697749980215
2 9:0.697639157137
2 10:0.603614745404
2 11:0.599662481541
3 4:0.0827045480215
3 5:0.181317425089
3 6:0.660356861607
3 7:0.0782615402471
3 8:0.652860546712
3 9:0.652579967162
3 10:0.603188915212
3 11:0.599955032043
4 5:0.208084994836
4 6:0.674921219334
4 7:0.0427821467833
4 8:0.668382603729
4 9:0.668120895154
4 10:0.640965450258
4 11:0.638122107384
5 6:0.793286478692
5 7:0.210515365318
5 8:0.55438875157
5 9:0.55359871461
5 10:0.710118602371
5 11:0.70862532618
6 7:0.660394967644
6 8:0.998926024294
6 9:0.999997615673
6 10:0.503030821747
6 11:0.492592431852
7 8:0.668230741924
7 9:0.668032874012
7 10:0.631643686621
7 11:0.628657255402
8 9:0.00281403667021
8 10:0.850882065708
8 11:0.852504298314
9 10:0.851856778021
9 11:0.853481509074
10 11:0.0140952584915
</hsp>