sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1E-A412-A411
X
>3F1G-A412-A411
X
>3R8N-A803-A802
X
>2QA4-01432-01431
X
>3CD6-01433-01432
X
>3CCJ-01433-01432
X
>3G78-A339-A338
X
>3CXC-01433-01432
X
>3CCS-01433-01432
X
>1QVG-01433-01432
X
>3CCE-01433-01432
X
>1FJG-A412-A411
X
</seq>
<hsp>
0 1:0.00248502966469
0 2:0.949943289969
0 3:0.506127866032
0 4:0.496576546162
0 5:0.507313507629
0 6:0.481574658942
0 7:0.496134496246
0 8:0.492599643035
0 9:0.497033661818
0 10:0.49230573798
0 11:0.483106314265
1 2:0.94841399251
1 3:0.50615026186
1 4:0.496623102447
1 5:0.507466947764
1 6:0.481979585282
1 7:0.496076896231
1 8:0.492644365099
1 9:0.497082974453
1 10:0.492361005542
1 11:0.48276080095
2 3:0.970060089512
2 4:0.944481301793
2 5:0.999999951399
2 6:0.92022304761
2 7:0.933182864835
2 8:0.939335935641
2 9:0.937804700593
2 10:0.937768521892
2 11:0.804157193187
3 4:0.0621619184204
3 5:0.061613027036
3 6:0.410130992999
3 7:0.0523633199553
3 8:0.072785300123
3 9:0.0768890976737
3 10:0.0727460424102
3 11:0.263586310296
4 5:0.0706583275768
4 6:0.395981730104
4 7:0.0287729952973
4 8:0.0297745050013
4 9:0.0389297037534
4 10:0.0283362414385
4 11:0.232946945693
5 6:0.414463154935
5 7:0.0763461302953
5 8:0.0760457336832
5 9:0.0914146822503
5 10:0.079775638138
5 11:0.267493730357
6 7:0.399473083197
6 8:0.387463922214
6 9:0.416789070086
6 10:0.40049137443
6 11:0.304439513147
7 8:0.0429565589725
7 9:0.0501563675705
7 10:0.0402032104812
7 11:0.228731297332
8 9:0.0396616115857
8 10:0.0204424824121
8 11:0.214999598387
9 10:0.0269566678223
9 11:0.239224171975
10 11:0.221298665435
</hsp>