sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OVA-C19-C18
X
>3OWW-B22-B21
X
>3U5D-12844-12794
X
>2DR8-B19-B18
X
>3U5B-2998-2997
X
>3U5H-52845-52795
X
>3KNH-A1249-A1248
X
>1N32-A1258-A1257
X
</seq>
<hsp>
0 1:0.24050020779
0 2:0.767077678723
0 3:0.0972891215147
0 4:0.663463119295
0 5:0.759476809625
0 6:0.591507986584
0 7:0.476985208907
1 2:0.739042193243
1 3:0.208329768831
1 4:0.723897797054
1 5:0.732190870161
1 6:0.667250451681
1 7:0.631268232639
2 3:0.780342611295
2 4:0.982169441781
2 5:0.0616305812176
2 6:0.917241626687
2 7:0.793030112707
3 4:0.65121989221
3 5:0.77104315632
3 6:0.619616971397
3 7:0.517992142955
4 5:0.944123783882
4 6:1.0
4 7:0.756012769928
5 6:0.914408291397
5 7:0.778665915275
6 7:0.357794898089
</hsp>