sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3HL2-E66-E65
X
>3OWI-B23-B22
X
>3G78-A36-A35
X
>3F4H-Y19-Y18
X
>3F2T-X72-X71
X
>3KNI-A1353-A1352
X
>2J02-W60-W59
X
</seq>
<hsp>
0 1:0.505705349394
0 2:0.628781909986
0 3:0.7380363522
0 4:0.727921005648
0 5:0.547467856734
0 6:0.901233251698
1 2:0.606721905471
1 3:0.905143390708
1 4:0.875465877765
1 5:0.363821206063
1 6:0.875761752668
2 3:0.613094399828
2 4:0.618441807168
2 5:0.758034632742
2 6:0.452219633654
3 4:0.128043807081
3 5:0.820351671516
3 6:0.885937682882
4 5:0.761069338086
4 6:0.886576975591
5 6:0.999999156269
</hsp>