sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OH5-A1279-A1278
X
>3OH7-A1279-A1278
X
>3CCR-01730-01729
X
>3U5H-52678-52677
X
>1YIT-02432-02431
X
>1VQ9-02432-02431
X
>1VQ8-02432-02431
X
</seq>
<hsp>
0 1:0.0109408937232
0 2:0.245490923271
0 3:0.801379910619
0 4:0.824675026293
0 5:0.80073841786
0 6:0.815401643702
1 2:0.248510624764
1 3:0.804074261937
1 4:0.827382941029
1 5:0.803490953537
1 6:0.818197772518
2 3:0.980856868307
2 4:0.999999812987
2 5:0.978503844407
2 6:0.992146890238
3 4:0.0605123380647
3 5:0.0359800834261
3 6:0.0455691595458
4 5:0.0535131864691
4 6:0.0351384508111
5 6:0.0249051785424
</hsp>