sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A1517-A1516
X
>3F1H-A1517-A1516
X
>3KNK-A1284-A1283
X
>3R8T-A2467-A2466
X
>3F1H-A1349-A1348
X
>3F1F-A1349-A1348
X
>2QA4-01729-01728
X
</seq>
<hsp>
0 1:0.00830144684961
0 2:0.508239600864
0 3:0.891442000111
0 4:0.519273758919
0 5:0.519204393162
0 6:0.616657496418
1 2:0.508455107635
1 3:0.890448604357
1 4:0.519269219504
1 5:0.519156076654
1 6:0.615096380675
2 3:0.819584794242
2 4:0.0429064300406
2 5:0.0447386682949
2 6:0.324501441388
3 4:0.808567449314
3 5:0.816050887586
3 6:1.0
4 5:0.0113821711939
4 6:0.326288165595
5 6:0.324902554386
</hsp>