ClaRNA

Doublet Group distance statistics: 52513

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C2 A 0, 0.000, 0.001, 0.001, 0.001 max_d=0.001 avg_d=0.001 std_dev=0.001
C4 A 0, 0.000, 0.001, 0.002, 0.002 max_d=0.002 avg_d=0.001 std_dev=0.001
N1 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
O2 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
N3 A 0, 0.000, 0.004, 0.009, 0.009 max_d=0.009 avg_d=0.004 std_dev=0.004
C5 A 0, 0.000, 0.005, 0.009, 0.009 max_d=0.009 avg_d=0.005 std_dev=0.005
N4 A 0, 0.000, 0.005, 0.010, 0.010 max_d=0.010 avg_d=0.005 std_dev=0.005
C6 A 0, 0.000, 0.006, 0.011, 0.011 max_d=0.011 avg_d=0.006 std_dev=0.006
C1' A 0, 0.000, 0.006, 0.012, 0.012 max_d=0.012 avg_d=0.006 std_dev=0.006
C2' A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
P B 0, 0.000, 0.013, 0.026, 0.026 max_d=0.026 avg_d=0.013 std_dev=0.013
C3' A 0, 0.000, 0.014, 0.028, 0.028 max_d=0.028 avg_d=0.014 std_dev=0.014
C5' B 0, 0.000, 0.014, 0.028, 0.028 max_d=0.028 avg_d=0.014 std_dev=0.014
OP2 B 0, 0.000, 0.015, 0.029, 0.029 max_d=0.029 avg_d=0.015 std_dev=0.015
O2' A 0, 0.000, 0.015, 0.029, 0.029 max_d=0.029 avg_d=0.015 std_dev=0.015
C4' A 0, 0.000, 0.015, 0.030, 0.030 max_d=0.030 avg_d=0.015 std_dev=0.015
O5' B 0, 0.000, 0.017, 0.034, 0.034 max_d=0.034 avg_d=0.017 std_dev=0.017
O4' A 0, 0.000, 0.019, 0.038, 0.038 max_d=0.038 avg_d=0.019 std_dev=0.019
OP1 B 0, 0.000, 0.019, 0.038, 0.038 max_d=0.038 avg_d=0.019 std_dev=0.019
C4' B 0, 0.000, 0.024, 0.048, 0.048 max_d=0.048 avg_d=0.024 std_dev=0.024
O4' B 0, 0.000, 0.026, 0.051, 0.051 max_d=0.051 avg_d=0.026 std_dev=0.026
C5' A 0, 0.000, 0.026, 0.052, 0.052 max_d=0.052 avg_d=0.026 std_dev=0.026
C3' B 0, 0.000, 0.027, 0.053, 0.053 max_d=0.053 avg_d=0.027 std_dev=0.027
O3' A 0, 0.000, 0.027, 0.054, 0.054 max_d=0.054 avg_d=0.027 std_dev=0.027
C6 B 0, 0.000, 0.033, 0.066, 0.066 max_d=0.066 avg_d=0.033 std_dev=0.033
N1 B 0, 0.000, 0.035, 0.069, 0.069 max_d=0.069 avg_d=0.035 std_dev=0.035
C1' B 0, 0.000, 0.035, 0.070, 0.070 max_d=0.070 avg_d=0.035 std_dev=0.035
O3' B 0, 0.000, 0.036, 0.071, 0.071 max_d=0.071 avg_d=0.036 std_dev=0.036
C5 B 0, 0.000, 0.037, 0.075, 0.075 max_d=0.075 avg_d=0.037 std_dev=0.037
OP2 A 0, 0.000, 0.038, 0.075, 0.075 max_d=0.075 avg_d=0.038 std_dev=0.038
C2' B 0, 0.000, 0.038, 0.076, 0.076 max_d=0.076 avg_d=0.038 std_dev=0.038
O5' A 0, 0.000, 0.040, 0.081, 0.081 max_d=0.081 avg_d=0.040 std_dev=0.040
C2 B 0, 0.000, 0.041, 0.081, 0.081 max_d=0.081 avg_d=0.041 std_dev=0.041
O2 B 0, 0.000, 0.042, 0.084, 0.084 max_d=0.084 avg_d=0.042 std_dev=0.042
P A 0, 0.000, 0.042, 0.084, 0.084 max_d=0.084 avg_d=0.042 std_dev=0.042
N3 B 0, 0.000, 0.044, 0.088, 0.088 max_d=0.088 avg_d=0.044 std_dev=0.044
C4 B 0, 0.000, 0.049, 0.098, 0.098 max_d=0.098 avg_d=0.049 std_dev=0.049
OP1 A 0, 0.000, 0.052, 0.103, 0.103 max_d=0.103 avg_d=0.052 std_dev=0.052
O4 B 0, 0.000, 0.056, 0.113, 0.113 max_d=0.113 avg_d=0.056 std_dev=0.056
O2' B 0, 0.000, 0.068, 0.135, 0.135 max_d=0.135 avg_d=0.068 std_dev=0.068

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.01 0.01
C2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.02 0.02 0.02
C2' 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01
C4 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.02 0.02 0.02
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01
C5 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.00 0.01 0.02 0.01
C5' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01
C6 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.00 0.02 0.02 0.01
N1 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.02 0.02 0.02
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.02 0.02 0.02
N4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.02 0.01
O2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.02 0.02 0.01
O2' 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.02 0.01 0.01
O3' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01
O4' 0.00 0.01 0.00 0.00 0.01 0.00 0.02 0.00 0.02 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00
O5' 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00
OP1 0.02 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.02 0.02 0.02 0.01 0.02 0.02 0.01 0.01 0.01 0.00 0.00 0.00
OP2 0.01 0.02 0.01 0.01 0.02 0.00 0.02 0.00 0.02 0.02 0.02 0.02 0.02 0.01 0.00 0.00 0.00 0.00 0.00 0.00
P 0.01 0.02 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.02 0.02 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00
C2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01
C2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00
C3' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.02 0.01 0.01 0.00 0.01 0.01 0.00 0.00
C4 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01
C4' 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.02 0.00 0.01 0.00 0.00 0.01 0.00 0.00
C5 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.02 0.01 0.01 0.01 0.01 0.01
C5' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.02 0.00 0.01 0.00 0.01 0.01 0.00 0.00
C6 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.02 0.01 0.02 0.01 0.01 0.01 0.01 0.01
N1 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01
N3 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.01
N4 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01
O2 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.01
O2' 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00
O3' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.02 0.00 0.01 0.00 0.01 0.01 0.01 0.01
O4' 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00
O5' 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00
OP1 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.01 0.00 0.01 0.01 0.01 0.01
OP2 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.03 0.01 0.02 0.00 0.01 0.01 0.02 0.01
P 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.01 0.00 0.01 0.01 0.01 0.01

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.01 0.00 0.00 0.01 0.00 0.01
C2 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01
C2' 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.01
C3' 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00
C4 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.02 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C4' 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00
C5 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.00 0.01 0.01 0.01
C5' 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00
C6 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.01 0.00 0.01 0.01 0.01 0.01
N1 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.01 0.00 0.01 0.01 0.01 0.01
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.01 0.01 0.01 0.01 0.01
O2 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01
O2' 0.02 0.02 0.00 0.00 0.02 0.00 0.02 0.00 0.03 0.03 0.02 0.02 0.00 0.02 0.02 0.01 0.01 0.00 0.01 0.01
O3' 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.02 0.00 0.01 0.00 0.01 0.01 0.01 0.01
O4 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.00 0.01 0.01 0.00 0.00 0.00
O4' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00
O5' 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00
OP1 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00
OP2 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00
P 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00