sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1NJI-A1379-A1377
X
>3CC2-01379-01377
X
>3CCL-01379-01377
X
>3CXC-01379-01377
X
>1S72-01379-01377
X
>1VQ9-01379-01377
X
>1JJ2-01379-01377
X
>1FFK-01332-01330
X
</seq>
<hsp>
0 1:0.500001870512
0 2:0.674629756051
0 3:0.736823196541
0 4:0.534507196692
0 5:0.84358899408
0 6:0.568504007916
0 7:0.968506444724
1 2:0.559540225619
1 3:0.727843307604
1 4:0.210957570013
1 5:0.63160570664
1 6:0.154170909464
1 7:0.55714242413
2 3:0.458248623483
2 4:0.431133010032
2 5:0.600460560388
2 6:0.546711535023
2 7:0.966291173092
3 4:0.665688103263
3 5:0.834946772758
3 6:0.723808261949
3 7:1.0
4 5:0.537640421943
4 6:0.144867991003
4 7:0.696215054012
5 6:0.578542055622
5 7:0.867441358306
6 7:0.585903027963
</hsp>